UNLOCKING THE GENETIC CODE TO THE HEART, LUNG AND BRAIN DEFECTS.

Every four minutes, a newborn is born with a birth defect, often with an unknown genetic cause, leaving patients, parents, and clinicians to navigate uncertainty regarding risk, treatment, and recurrence. OUR MISSION is to address this gap by combining human genetics with disease modeling and quantitative cell biology to understand and diagnose congenital anomalies affecting the heart, lungs, and brain.

RESEARCH

VISION

To be at the forefront of the cutting-edge field of functional genomics, enabling scientific curiosity, excellence in research, and groundbreaking discoveries to improve the clinical outcomes for babies born with heart, lung and brain defects.

PROJECTS

QUANTITATIVE CELL BIOLOGY

A cell is a highly organized entity with dynamic regulation of its organelles. During division and differentiation, cells tightly control the number and positioning of organelles. However, the underlying cellular and molecular mechanisms are not well understood. My lab seeks to answer these fundamental questions in cell biology using a unique model system, multiciliated cells (MCCs). MCCs are specialized epithelial cells that assemble hundreds of centrioles and cilia. Errors in in the assembly or centriole or cilia number regulation contribute to respiratory and heart defects, microcephaly, and cancer. Using cutting-edge tools across diverse model systems, our work reveals fundamental rules of development and regeneration while laying a strong foundation for translational advances and new therapeutic strategies to improve human health.

HIGH-THROUGHPUT TRANSLATIONAL GENOMICS.

We are committed to uncovering the genetic basis of congenital heart and lung diseases, as well as neurodevelopmental disorders such as microcephaly, conditions that profoundly affect millions of individuals and their families worldwide. Employing state-of-the-art high-throughput sequencing and advanced CRISPR-based genome editing approaches, our lab innovatively identifies and characterizes pathogenic genetic variants responsible for these complex disorders. We leverage in vivo models, alongside stem cell based organoids, to precisely model human diseases and dissect intricate molecular and mechanochemical pathways. By pioneering novel methodologies and integrative experimental pipelines, our research not only elucidates fundamental biological mechanisms but also paves the way toward transformative diagnostic tools and personalized therapeutic strategies.

RESOURCES

MICROSCOPY

NIKON AX-R confocal: This new state-of-the-art microscope is equipped with 8K Galvo and 2K resonant scanners, 4 solid-state laser lines (405, 488, 561, and 640), and 4 PMT detectors with 2 GaAsP detectors. The software capabilities include advanced 2D tracking of the cells or organelles, 3D measurement analysis, deconvolution, and tile scanning.

The LEICA SP8 confocal microscope: The microscope is built off a DMi8 inverted research microscope and comes equipped with a white light laser scan head that is tunable within the range of 470-670nm with up to eight laser lines; a 405nm laser; a filter-free spectral detector for up to five individually regulatable channels.

NIKON SMZ1270 Stereomicroscope: The lab has two sets of stereomicroscopes equipped with a camera and computer for high-speed imaging.

OTHER

Mechanical stretcher:  Lab is equipped with a state-of-the-art custom-made radial mechanical stretcher controlled by the software and can stretch and compress the tissue. It also enables live imaging of cellular events like the apical expansion of MCCs and centriole amplification using a confocal microscope while applying mechanical forces.

Microinjection room: Four sets of microinjection stations that include picospritzers, micromanipulators, needle holders, and stereomicroscopes.

TOOLS

High-Throughput CRISPR-Cas9 and morpholino based screening

Imaging: Confocal and Super-resolution microscopy, live imaging, Scanning Electron Microscopy (SEM), Transmission electron microscopy (TEM), and Electron Tomography (ET)

“Omics“: Single cell/nuclei sequencing and proteomics

Computational biology: Mathematical modeling and machine learning

Mechanobiology: Biomechanical manipulations of cells and skin organoids

AlphaFold to predict protein structure, protein-protein interactions and mutation impacts on protein structure

MODELS

MEET THE TEAM

  • Saurabh Kulkarni

    Assistant Professor

  • Dana Urbatsch

    Lab manager

  • Angelo Arrigo

    Graduate Student

  • Savanna Hinson

    Graduate Student

  • Venkatraman Rao

    Senior Postdoctoral Associate

  • Vani Narayan

    Postdoctoral Associate

  • Victoria Hua

    Undergraduate Researcher

  • You

AFFILIATIONS

DEVELOPMENTAL GENOMICS CENTER

The Developmental Genomics Center at UVA will bridge developmental biologists with genomic and clinical translational scientists across grounds and with nearby Inova Health System and the NIH NICHD. The Center aims to integrate genomic technologies and next-generation sequencing datasets from human and animal model systems to address cutting-edge research questions in cell and developmental biology.

CENTER FOR MEMBRANE AND CELL PHYSIOLOGY

UVA’s Center for Membrane and Cell Physiology strives to understand fundamental biological processes at the highest possible spatial and temporal resolution. Our ultimate goal is to use high-end imaging, structural, biophysical, and biological and chemical probe technologies to make impactful discoveries on understanding the causes, development, and cures of diseases ranging from cardiovascular to cancer to neurological and infectious diseases.

CHILD HEALTH RESEARCH CENTER

The center's mission is to support scientists engaged in basic and clinical research to discover innovative therapies for childhood diseases. We bridge the gap between the laboratory and the bedside with cutting-edge research that improves the lives of children.

GRADUATE PROGRAMS AND TRAINING GRANTS

The Kulkarni lab is affiliated with postdoctoral and graduate T-32 training grants supported by the National Institutes of Health at the University of Virginia. Post-doctoral and Ph.D. applicants who are interested in the Kulkarni lab may be good candidates for applying for financial support from these training grants.

CONTACT

Kulkarni lab

Department of Cell Biology

Department of Biology,

University of Virginia

Charlottesville, VA 22908

Email: sk4xq@virginia.edu

Phone No: +14342976833